I have a 2007 ES350 with 36K and have not seen this problem as you described. I don't mean to imply ignorance, but have you tried reprogramming the two buttons including the key fobs? Sometimes the computer gets part of the memory cleared, especially if the battery was disconnected for service or there was a fuse pulled for service, etc. I did have to reprogram my key fobs for the seat memory once, but the buttons on the door had stayed working as expected. I hope you can get this resolved, as it is a nice feature on a great car.
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