I have a 2005 Toyota Matrix XR 5-speed with 92,000 miles. I, too, have a transmission problem, and the tranny is being torn down tomorrow to see if it can be repaired rather than replaced. (A USED tranny costs $1,700!!!) I called Toyota and was told by a CSR that my car had a 60,000 mile warranty or five years, so I'm out of luck. I also had the clutch replaced at 60,000 miles. My three previous Toyotas (2 Corollas and a Camry) had much better track records. I suspect that Toyota reliability is slipping and I doubt I will buy another one.
Having driving Toyotas now for 25 years - Corolla specificlly (manual trans); i can definitely say that Toyota has gone downhill from every aspect.
Fortunately no transmission issues; i drove my last mt till 275k (no clutch replacement) ever either. The more recent ones, i found shifter tends to lock a bit; they had to get it to lube the links; clutch squeeks all the time despite having tried to fix it numerous times.
i stood by toyota but next vehicle i am definitely moving to honda.
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